PH01000545G1010's details annotation
1.Annotation
ICBR annotation: DUF1336 domain containing protein, expressed
Blast result AT2G28320 : 5.00E-116
Blast annotation: Pleckstrin homology (PH) and lipid-binding START domains-containing protein
2.Location
Scaffold: PH01000545
Strand: +
| Region | Start | End |
| gene | 629066 | 635027 |
| mRNA | 629066 | 635027 |
| exon | 629066 | 629312 |
| exon | 629383 | 629429 |
| exon | 629503 | 629603 |
| exon | 630811 | 630875 |
| exon | 631372 | 631688 |
| exon | 632247 | 632310 |
| exon | 632394 | 632575 |
| exon | 632804 | 632905 |
| exon | 633095 | 633238 |
| exon | 633333 | 633428 |
| exon | 634068 | 634169 |
| exon | 634310 | 635027 |
| CDS | 629258 | 629312 |
| CDS | 629383 | 629429 |
| CDS | 629503 | 629603 |
| CDS | 630811 | 630875 |
| CDS | 631372 | 631688 |
| CDS | 632247 | 632310 |
| CDS | 632394 | 632575 |
| CDS | 632804 | 632905 |
| CDS | 633095 | 633238 |
| CDS | 633333 | 633428 |
| CDS | 634068 | 634169 |
| CDS | 634310 | 634405 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07059.11 | DUF1336 | 256 | 446 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.