Annotation of co-expression genes

PH01000548G0610's details annotation

1.Annotation

ICBR annotation: OsSPL3 - SBP-box gene family member, expressed

Blast result AT5G43270 : 5.60E-35
Blast annotation: squamosa promoter binding protein-like 2

2.Location

Scaffold: PH01000548
Strand: -

RegionStartEnd
gene433324435597
mRNA433324435597
exon433324433842
exon433921434662
exon435492435597
CDS433779433842
CDS433921434662
CDS435492435597

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001300regulation of actin filament polymerization,
HD-ZIP Transcription_Regulator(from PlantTFDB)
SBP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
cytoskeleton,
molybdenum ion binding,
coexpression networkCFinderM001301TALE Transcription_Regulator(from PlantTFDB)
SBP Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
glycogen biosynthetic process,
regulation of actin filament polymerization,
cytoskeleton,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SBP
Transcription_Regulator(from PlantTFDB)SBP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03110.13SBP237286

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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