Annotation of co-expression genes

PH01000548G0700's details annotation

1.Annotation

ICBR annotation: arginine N-methyltransferase 5, putative, expressed

Blast result AT4G31120 : 7.00E-150
Blast annotation: SHK1 binding protein 1

2.Location

Scaffold: PH01000548
Strand: +

RegionStartEnd
gene486275491134
mRNA486275491134
exon486275486962
exon487634487711
exon487920487988
exon488716488769
exon488919488993
exon489194489286
exon489370489473
exon489586489634
exon489705489791
exon489909490014
exon490104490191
exon490283490376
exon490493491134
CDS486840486962
CDS487634487711
CDS487920487988
CDS488716488769
CDS488919488993
CDS489194489286
CDS489370489473
CDS489586489634
CDS489705489791
CDS489909490014
CDS490104490191
CDS490283490376
CDS490493490576

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05185.15PRMT567196
PF17286.1PRMT5_C199365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transportprotein arginine N-methyltransferase 5 [EC:2.1.1.125]ko03013K02516

10.Gene Ontology

GO AccessionGO Annotation
GO:0006479protein methylation
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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