Annotation of co-expression genes

PH01000551G0610's details annotation

1.Annotation

ICBR annotation: protein kinase family protein, putative, expressed

Blast result AT4G38470 : 3.00E-126
Blast annotation: ACT-like protein tyrosine kinase family protein

2.Location

Scaffold: PH01000551
Strand: +

RegionStartEnd
gene368930371090
mRNA368930371090
exon368930370018
exon370810371090
CDS369786370018
CDS370810371035

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000136CPP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr133381

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0008152metabolic process
GO:0016597amino acid binding
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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