PH01000552G0300's details annotation
1.Annotation
ICBR annotation: mov34/MPN/PAD-1 family protein, expressed
Blast result AT4G16144 : 2.00E-138
Blast annotation: associated molecule with the SH3 domain of STAM 3
2.Location
Scaffold: PH01000552
Strand: -
| Region | Start | End |
| gene | 298490 | 306480 |
| mRNA | 298490 | 306480 |
| exon | 298490 | 299280 |
| exon | 299748 | 299800 |
| exon | 300654 | 300716 |
| exon | 302223 | 302297 |
| exon | 302898 | 302960 |
| exon | 303035 | 303124 |
| exon | 303299 | 303623 |
| exon | 303739 | 303785 |
| exon | 303876 | 303981 |
| exon | 304803 | 304915 |
| exon | 305039 | 305212 |
| exon | 305458 | 305551 |
| exon | 305639 | 305703 |
| exon | 305922 | 306480 |
| CDS | 299100 | 299280 |
| CDS | 299748 | 299800 |
| CDS | 300654 | 300716 |
| CDS | 302223 | 302297 |
| CDS | 302898 | 302960 |
| CDS | 303035 | 303124 |
| CDS | 303299 | 303623 |
| CDS | 303739 | 303785 |
| CDS | 303876 | 303981 |
| CDS | 304803 | 304915 |
| CDS | 305039 | 305212 |
| CDS | 305458 | 305551 |
| CDS | 305639 | 305703 |
| CDS | 305922 | 305999 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001680 | COPII_vesicle_coating SET Transcription_Regulator(from iTAK) potassium_ion_transmembrane_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08969.10 | USP8_dimer | 8 | 92 |
| PF01398.20 | JAB | 330 | 435 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | STAM-binding protein [EC:3.1.2.15] | ko04144 | K11866 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.