Gene details

Annotation of co-expression genes

PH01000553G0260's details annotation

1.Annotation

ICBR annotation: regulator of nonsense transcripts 1, putative, expressed

Blast result AT5G47010 : 0.00E+00
Blast annotation: RNA helicase, putative

2.Location

Scaffold: PH01000553
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000545	binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
RNA transport	regulator of nonsense transcripts 1 [EC:3.6.4.-]	ko03013	K14326
mRNA surveillance pathway	regulator of nonsense transcripts 1 [EC:3.6.4.-]	ko03015	K14326

10.Gene Ontology

GO Accession	GO Annotation
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677	DNA binding
GO:0004386	helicase activity
GO:0005524	ATP binding
GO:0005737	cytoplasm
GO:0008270	zinc ion binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.