Annotation of co-expression genes

PH01000555G0170's details annotation

1.Annotation

ICBR annotation: amino acid permease family protein, putative, expressed

Blast result AT1G30450 : 2.00E-128
Blast annotation: cation-chloride co-transporter 1

2.Location

Scaffold: PH01000555
Strand: -

RegionStartEnd
gene101236107727
mRNA101236107727
exon101236101385
exon101478101726
exon102401102462
exon103271103371
exon103644103758
exon104062104153
exon104546104624
exon104794104940
exon106061107727
CDS101267101385
CDS101478101726
CDS102401102462
CDS103271103371
CDS103644103758
CDS104062104153
CDS104546104624
CDS104794104940
CDS106061106236

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001262RLK-Pelle_LRR-II (from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
nucleotide kinase activity,
phosphotransferase activity, phosphate group as acceptor,
nucleobase-containing compound kinase activity,
nucleotide_phosphorylation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00324.20AA_permease145358

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006810transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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