Annotation of co-expression genes

PH01000555G0490's details annotation

1.Annotation

ICBR annotation: GTP binding protein, putative, expressed

Blast result AT5G03300 : 1.60E-42
Blast annotation: adenosine kinase 2

2.Location

Scaffold: PH01000555
Strand: -

RegionStartEnd
gene361187365756
mRNA361187365756
exon361187361441
exon361525361692
exon361891361956
exon362045362064
exon362535362569
exon362965363032
exon363138363239
exon363858363889
exon364039364085
exon364228364281
exon365058365206
exon365239365756
CDS361361361441
CDS361525361692
CDS361891361956
CDS362045362064
CDS362535362569
CDS362965363032
CDS363138363239
CDS363858363889
CDS364039364085
CDS364228364281
CDS365058365206
CDS365239365307

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000666purine ribonucleoside salvage,
adenosine kinase activity,
GTP binding,
small GTPase mediated signal transduction,
acid-amino acid ligase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00294.23PfkB74249

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0004001adenosine kinase activity
GO:0005525GTP binding
GO:0006166purine ribonucleoside salvage

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.