PH01000556G0340's details annotation
1.Annotation
ICBR annotation: endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
Blast result AT1G36050 : 7.60E-39
Blast annotation: Endoplasmic reticulum vesicle transporter protein
2.Location
Scaffold: PH01000556
Strand: +
| Region | Start | End |
| gene | 190164 | 194214 |
| mRNA | 190164 | 194214 |
| exon | 190164 | 191136 |
| exon | 191991 | 192085 |
| exon | 192812 | 192895 |
| exon | 192982 | 193062 |
| exon | 193950 | 194030 |
| exon | 194141 | 194214 |
| CDS | 190995 | 191136 |
| CDS | 191991 | 192085 |
| CDS | 192812 | 192895 |
| CDS | 192982 | 193062 |
| CDS | 193950 | 194030 |
| CDS | 194141 | 194182 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000497 | protein complex, extracellular region, calmodulin binding, protein polymerization, plant-type cell wall organization, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13850.5 | ERGIC_N | 8 | 104 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.