PH01000556G0480's details annotation
1.Annotation
ICBR annotation: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
Blast result AT5G04940 : 1.00E-157
Blast annotation: SU(VAR)3-9 homolog 1
2.Location
Scaffold: PH01000556
Strand: -
| Region | Start | End |
| gene | 279320 | 284244 |
| mRNA | 279320 | 284244 |
| exon | 279320 | 282249 |
| exon | 282890 | 283091 |
| exon | 283563 | 284244 |
| CDS | 280210 | 282249 |
| CDS | 282890 | 283091 |
| CDS | 283563 | 283618 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000163 | SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation nucleus, RNA-directed RNA polymerase activity, zinc ion binding, histone_binding histone-lysine N-methyltransferase activity, |
| coexpression network | CFinderM000323 | Diterpenoid_biosynthesis Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation electron carrier activity, heme binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, histone_lysine_methylation histone_binding histone-lysine N-methyltransferase activity, oxidation-reduction process, |
| coexpression network | CFinderM001014 | SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation |
| coexpression network | CFinderM001101 | SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation Lysine_degradation nucleus, ubiquitin ligase complex, histone-lysine N-methyltransferase activity, histone_binding RNA_degradation transcription, DNA-dependent, protein ubiquitination, |
| coexpression network | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation |
| coexpression network | CFinderM001488 | STAT Transcription_Regulator(from PlantTFDB) TKL-Pl-5 (from iTAK) Lysine_degradation nucleus, chloroplast, SET Transcription_Regulator(from iTAK) histone_methylation mRNA processing, histone_lysine_methylation |
| coexpression network | CFinderM001705 | Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation chloroplast, histone-lysine N-methyltransferase activity, histone_binding ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02182.16 | SAD_SRA | 306 | 458 |
| PF05033.15 | Pre-SET | 487 | 585 |
| PF00856.27 | SET | 604 | 737 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine degradation | euchromatic histone-lysine N-methyltransferase [EC:2.1.1.43] | ko00310 | K11420 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
| GO:0016571 | histone methylation |
| GO:0018024 | histone-lysine N-methyltransferase activity |
| GO:0034968 | histone lysine methylation |
| GO:0042393 | histone binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.