PH01000556G0620's details annotation
1.Annotation
ICBR annotation: SNF1-related protein kinase regulatory subunit beta-1, putative, expressed
Blast result AT5G21170 : 5.00E-76
Blast annotation: 5-AMP-activated protein kinase beta-2 subunit protein
2.Location
Scaffold: PH01000556
Strand: -
| Region | Start | End |
| gene | 358021 | 360055 |
| mRNA | 358021 | 360055 |
| exon | 358021 | 358600 |
| exon | 358762 | 358924 |
| exon | 359025 | 359209 |
| exon | 359566 | 360055 |
| CDS | 358235 | 358600 |
| CDS | 358762 | 358924 |
| CDS | 359025 | 359209 |
| CDS | 359566 | 359604 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000093 | NAC Transcription_Regulator(from PlantTFDB) GH79 Glycoside_Hydrolases DBB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16561.4 | AMPK1_CBM | 50 | 130 |
| PF04739.14 | AMPKBI | 163 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.