PH01000558G0040's details annotation
1.Annotation
ICBR annotation: AT hook motif family protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000558
Strand: -
| Region | Start | End |
| gene | 35305 | 38196 |
| mRNA | 35305 | 38196 |
| exon | 35305 | 35677 |
| exon | 36111 | 36191 |
| exon | 36268 | 36327 |
| exon | 36442 | 36495 |
| exon | 36570 | 36623 |
| exon | 36717 | 36773 |
| exon | 36983 | 38196 |
| CDS | 35619 | 35677 |
| CDS | 36111 | 36191 |
| CDS | 36268 | 36327 |
| CDS | 36442 | 36495 |
| CDS | 36570 | 36623 |
| CDS | 36717 | 36773 |
| CDS | 36983 | 37964 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000143 | pyruvate metabolic process, pyruvate, phosphate dikinase activity, phosphorylation, Pyruvate_metabolism Carbon_fixation_in_photosynthetic_organisms response to hormone stimulus, ubiquitin ligase complex, protein ubiquitination, |
| coexpression network | CFinderM000969 | Sulfur_relay_system Cysteine_and_methionine_metabolism Phosphatidylinositol_signaling_system Glycerophospholipid_metabolism cysteine-type endopeptidase activity, |
| coexpression network | CFinderM001274 | mitochondrial ribosome, protein folding, SNARE_interactions_in_vesicular_transport PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.