PH01000558G0660's details annotation
1.Annotation
ICBR annotation: zinc finger protein, putative, expressed
Blast result AT3G21820 : 1.10E-77
Blast annotation: histone-lysine N-methyltransferase ATXR2
2.Location
Scaffold: PH01000558
Strand: -
| Region | Start | End |
| gene | 450494 | 458637 |
| mRNA | 450494 | 458637 |
| exon | 450494 | 451226 |
| exon | 451323 | 451379 |
| exon | 451473 | 451549 |
| exon | 452143 | 452206 |
| exon | 452302 | 452397 |
| exon | 452942 | 453029 |
| exon | 453396 | 453526 |
| exon | 453952 | 453983 |
| exon | 454424 | 454484 |
| exon | 454531 | 454735 |
| exon | 455068 | 455174 |
| exon | 455665 | 455781 |
| exon | 456089 | 456145 |
| exon | 456368 | 456443 |
| exon | 456910 | 457044 |
| exon | 458533 | 458637 |
| CDS | 451113 | 451226 |
| CDS | 451323 | 451379 |
| CDS | 451473 | 451549 |
| CDS | 452143 | 452206 |
| CDS | 452302 | 452397 |
| CDS | 452942 | 453029 |
| CDS | 453396 | 453526 |
| CDS | 453952 | 453983 |
| CDS | 454424 | 454484 |
| CDS | 454531 | 454735 |
| CDS | 455068 | 455174 |
| CDS | 455665 | 455781 |
| CDS | 456089 | 456145 |
| CDS | 456368 | 456443 |
| CDS | 456910 | 457044 |
| CDS | 458533 | 458570 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000760 | CMGC_CLK (from iTAK) cullin-RING ubiquitin ligase complex, cytoplasm, SET Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 385 | 452 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.