Annotation of co-expression genes

PH01000559G0330's details annotation

1.Annotation

ICBR annotation: protein transport protein, putative, expressed

Blast result AT2G21630 : 1.00E-101
Blast annotation: Sec23/Sec24 protein transport family protein

2.Location

Scaffold: PH01000559
Strand: -

RegionStartEnd
gene226894237232
mRNA226894237232
exon226894227655
exon227856227960
exon228234228497
exon228590228751
exon230008230085
exon230823230898
exon231365231507
exon231769231816
exon232054232215
exon232541232792
exon232952233086
exon235445235618
exon235753235968
exon236060237232
CDS227512227655
CDS227856227960
CDS228234228497
CDS228590228751
CDS230008230085
CDS230823230898
CDS231365231507
CDS231769231816
CDS232054232215
CDS232541232792
CDS232952233086
CDS235445235618
CDS235753235968
CDS236060236569

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04810.14zf-Sec23_Sec245492
PF04811.14Sec23_trunk123300
PF04811.14Sec23_trunk436484
PF04811.14Sec23_trunk498534
PF04815.14Sec23_helical579676
PF00626.21Gelsolin692779

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0006886intracellular protein transport
GO:0006888ER to Golgi vesicle-mediated transport
GO:0008270zinc ion binding
GO:0030127COPII vesicle coat

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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