PH01000559G0950's details annotation
1.Annotation
ICBR annotation: glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
Blast result AT3G19280 : 2.00E-148
Blast annotation: fucosyltransferase 11
2.Location
Scaffold: PH01000559
Strand: -
| Region | Start | End |
| gene | 621965 | 628417 |
| mRNA | 621965 | 628417 |
| exon | 621965 | 622836 |
| exon | 623151 | 623378 |
| exon | 624314 | 624470 |
| exon | 625022 | 625126 |
| exon | 625618 | 625859 |
| exon | 626384 | 626501 |
| exon | 627342 | 627492 |
| exon | 627708 | 628417 |
| CDS | 622581 | 622836 |
| CDS | 623151 | 623378 |
| CDS | 624314 | 624470 |
| CDS | 625022 | 625126 |
| CDS | 625618 | 625859 |
| CDS | 626384 | 626501 |
| CDS | 627342 | 627492 |
| CDS | 627708 | 627932 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001036 | GT10 GlycosylTransferases Various_types_of_N-glycan_biosynthesis Fructose_and_mannose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism protein glycosylation, Protein_processing_in_endoplasmic_reticulum Butirosin_and_neomycin_biosynthesis Streptomycin_biosynthesis calcium ion transport, hexokinase activity, calcium:proton_antiporter_activity UDP-glucose:glycoprotein_glucosyltransferase_activity fucosyltransferase_activity mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT10 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00852.18 | Glyco_transf_10 | 203 | 367 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Various types of N-glycan biosynthesis | glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] | ko00513 | K00753 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006486 | protein glycosylation |
| GO:0008417 | fucosyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.