PH01000560G0630's details annotation
1.Annotation
ICBR annotation: beta-amylase, putative, expressed
Blast result AT3G23920 : 3.00E-177
Blast annotation: beta-amylase 1
2.Location
Scaffold: PH01000560
Strand: +
| Region | Start | End |
| gene | 346983 | 349718 |
| mRNA | 346983 | 349718 |
| exon | 346983 | 347731 |
| exon | 347856 | 348066 |
| exon | 348155 | 348265 |
| exon | 348345 | 349718 |
| CDS | 347328 | 347731 |
| CDS | 347856 | 348066 |
| CDS | 348155 | 348265 |
| CDS | 348345 | 348968 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01373.16 | Glyco_hydro_14 | 45 | 433 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000272 | polysaccharide catabolic process |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016161 | beta-amylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.