PH01000560G0730's details annotation
1.Annotation
ICBR annotation: kinase, pfkB family, putative, expressed
Blast result AT4G28706 : 1.50E-51
Blast annotation: pfkB-like carbohydrate kinase family protein
2.Location
Scaffold: PH01000560
Strand: +
| Region | Start | End |
| gene | 389712 | 394471 |
| mRNA | 389712 | 394471 |
| exon | 389712 | 390829 |
| exon | 390936 | 391025 |
| exon | 391181 | 391258 |
| exon | 391331 | 391405 |
| exon | 391970 | 392022 |
| exon | 392700 | 392850 |
| exon | 393078 | 393144 |
| exon | 393542 | 393645 |
| exon | 393785 | 393920 |
| exon | 394346 | 394471 |
| CDS | 390692 | 390829 |
| CDS | 390936 | 391025 |
| CDS | 391181 | 391258 |
| CDS | 391331 | 391405 |
| CDS | 391970 | 392022 |
| CDS | 392700 | 392850 |
| CDS | 393078 | 393144 |
| CDS | 393542 | 393645 |
| CDS | 393785 | 393920 |
| CDS | 394346 | 394401 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00294.23 | PfkB | 50 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.