PH01000560G1100's details annotation
1.Annotation
ICBR annotation: CESA7 - cellulose synthase, expressed
Blast result AT5G17420 : 1.90E-28
Blast annotation: Cellulose synthase family protein
2.Location
Scaffold: PH01000560
Strand: +
| Region | Start | End |
| gene | 612029 | 615084 |
| mRNA | 612029 | 615084 |
| exon | 612029 | 612900 |
| exon | 613012 | 613231 |
| exon | 613307 | 613419 |
| exon | 614222 | 614303 |
| exon | 614348 | 615084 |
| CDS | 612748 | 612900 |
| CDS | 613012 | 613231 |
| CDS | 613307 | 613419 |
| CDS | 614222 | 614303 |
| CDS | 614348 | 614442 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001225 | Valine,_leucine_and_isoleucine_degradation TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) beta-Alanine_metabolism Propanoate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14569.5 | zf-UDP | 57 | 135 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.