PH01000561G0090's details annotation
1.Annotation
ICBR annotation: Leucine Rich Repeat family protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000561
Strand: -
| Region | Start | End |
| gene | 52482 | 60482 |
| mRNA | 52482 | 60482 |
| exon | 52482 | 52803 |
| exon | 53069 | 53120 |
| exon | 53342 | 53405 |
| exon | 53842 | 53943 |
| exon | 54154 | 57287 |
| exon | 58581 | 58854 |
| exon | 59431 | 60482 |
| CDS | 52748 | 52803 |
| CDS | 53069 | 53120 |
| CDS | 53342 | 53405 |
| CDS | 53842 | 53943 |
| CDS | 54154 | 57287 |
| CDS | 58581 | 58854 |
| CDS | 59431 | 59501 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
| coexpression network | CFinderM000123 | one-carbon metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.