PH01000561G0310's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000561
Strand: -
| Region | Start | End |
| gene | 194945 | 202641 |
| mRNA | 194945 | 202641 |
| exon | 194945 | 196405 |
| exon | 197732 | 197826 |
| exon | 198055 | 198130 |
| exon | 198460 | 198582 |
| exon | 199304 | 199349 |
| exon | 200441 | 200503 |
| exon | 201079 | 201461 |
| exon | 201726 | 202641 |
| CDS | 196262 | 196405 |
| CDS | 197732 | 197826 |
| CDS | 198055 | 198130 |
| CDS | 198460 | 198582 |
| CDS | 199304 | 199349 |
| CDS | 200441 | 200503 |
| CDS | 201079 | 201461 |
| CDS | 201726 | 201812 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
| Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00642.23 | zf-CCCH | 266 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.