PH01000562G0840's details annotation
1.Annotation
ICBR annotation: endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Blast result AT3G58580 : 0.00E+00
Blast annotation: DNAse I-like superfamily protein
2.Location
Scaffold: PH01000562
Strand: -
| Region | Start | End |
| gene | 612445 | 619048 |
| mRNA | 612445 | 619048 |
| exon | 612445 | 612738 |
| exon | 613182 | 613323 |
| exon | 613472 | 613622 |
| exon | 613703 | 613817 |
| exon | 613909 | 614000 |
| exon | 614081 | 614134 |
| exon | 614659 | 614745 |
| exon | 614835 | 614921 |
| exon | 614996 | 615079 |
| exon | 615165 | 615251 |
| exon | 615724 | 616483 |
| exon | 618449 | 619048 |
| CDS | 612486 | 612738 |
| CDS | 613182 | 613323 |
| CDS | 613472 | 613622 |
| CDS | 613703 | 613817 |
| CDS | 613909 | 614000 |
| CDS | 614081 | 614134 |
| CDS | 614659 | 614745 |
| CDS | 614835 | 614921 |
| CDS | 614996 | 615079 |
| CDS | 615165 | 615251 |
| CDS | 615724 | 616483 |
| CDS | 618449 | 618606 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15801.4 | zf-C6H2 | 72 | 110 |
| PF03372.22 | Exo_endo_phos | 258 | 591 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 6[EC:3.1.-.-] | ko03018 | K12603 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.