PH01000563G0530's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT3G49240 : 6.00E-133
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000563
Strand: -
| Region | Start | End |
| gene | 327295 | 332770 |
| mRNA | 327295 | 332770 |
| exon | 327295 | 330124 |
| exon | 331663 | 332770 |
| CDS | 328406 | 330124 |
| CDS | 331663 | 331689 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13812.5 | PPR_3 | 40 | 91 |
| PF01535.19 | PPR | 119 | 148 |
| PF01535.19 | PPR | 159 | 182 |
| PF01535.19 | PPR | 192 | 214 |
| PF01535.19 | PPR | 229 | 257 |
| PF01535.19 | PPR | 270 | 299 |
| PF13041.5 | PPR_2 | 301 | 349 |
| PF13041.5 | PPR_2 | 371 | 418 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.