Annotation of co-expression genes

PH01000563G0540's details annotation

1.Annotation

ICBR annotation: calcineurin B, putative, expressed

Blast result AT5G24270 : 2.10E-46
Blast annotation: Calcium-binding EF-hand family protein

2.Location

Scaffold: PH01000563
Strand: +

RegionStartEnd
gene333444335692
mRNA333444335692
exon333444333636
exon333690333798
exon333949334001
exon334876334956
exon335072335184
exon335418335692
CDS333547333636
CDS333690333798
CDS333949334001
CDS334876334956
CDS335072335184
CDS335418335487

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13202.5EF-hand_53050
PF13499.5EF-hand_763132

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005509calcium ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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