PH01000563G0660's details annotation
1.Annotation
ICBR annotation: aspartic proteinase oryzasin-1 precursor, putative, expressed
Blast result AT1G11910 : 7.10E-43
Blast annotation: aspartic proteinase A1
2.Location
Scaffold: PH01000563
Strand: -
| Region | Start | End |
| gene | 422704 | 429737 |
| mRNA | 422704 | 429737 |
| exon | 422704 | 422884 |
| exon | 422956 | 423020 |
| exon | 423151 | 423261 |
| exon | 423359 | 423627 |
| exon | 424126 | 424200 |
| exon | 424898 | 424991 |
| exon | 425342 | 425430 |
| exon | 427603 | 427717 |
| exon | 428395 | 429737 |
| CDS | 422857 | 422884 |
| CDS | 422956 | 423020 |
| CDS | 423151 | 423261 |
| CDS | 423359 | 423627 |
| CDS | 424126 | 424200 |
| CDS | 424898 | 424991 |
| CDS | 425342 | 425430 |
| CDS | 427603 | 427717 |
| CDS | 428395 | 428622 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000975 | GTnc GlycosylTransferases tRNA (guanine-N1-)-methyltransferase activity, tRNA methylation, chitin catabolic process, cell wall macromolecule catabolic process, chaperone binding, chitinase activity, transferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00026.22 | Asp | 224 | 310 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.