PH01000565G0560's details annotation
1.Annotation
ICBR annotation: guanine nucleotide exchange family protein, putative, expressed
Blast result AT4G35380 : 0.00E+00
Blast annotation: SEC7-like guanine nucleotide exchange family protein
2.Location
Scaffold: PH01000565
Strand: +
| Region | Start | End |
| gene | 423662 | 435006 |
| mRNA | 423662 | 435006 |
| exon | 423662 | 426266 |
| exon | 426546 | 427450 |
| exon | 428548 | 428621 |
| exon | 428840 | 428939 |
| exon | 429549 | 430017 |
| exon | 430091 | 430383 |
| exon | 430475 | 430748 |
| exon | 431416 | 431659 |
| exon | 431898 | 431979 |
| exon | 432091 | 432412 |
| exon | 432616 | 432961 |
| exon | 433082 | 433740 |
| exon | 434334 | 435006 |
| CDS | 426246 | 426266 |
| CDS | 426546 | 427450 |
| CDS | 428548 | 428621 |
| CDS | 428840 | 428939 |
| CDS | 429549 | 430017 |
| CDS | 430091 | 430383 |
| CDS | 430475 | 430748 |
| CDS | 431416 | 431659 |
| CDS | 431898 | 431979 |
| CDS | 432091 | 432412 |
| CDS | 432616 | 432961 |
| CDS | 433082 | 433740 |
| CDS | 434334 | 434939 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16213.4 | DCB | 9 | 184 |
| PF12783.6 | Sec7_N | 334 | 364 |
| PF01369.19 | Sec7 | 380 | 559 |
| PF09324.9 | DUF1981 | 868 | 950 |
| PF16206.4 | Mon2_C | 1026 | 1099 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005086 | ARF guanyl-nucleotide exchange factor activity |
| GO:0005488 | binding |
| GO:0032012 | regulation of ARF protein signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.