Annotation of co-expression genes

PH01000566G0290's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolases family 16, putative, expressed

Blast result AT4G28850 : 3.60E-53
Blast annotation: xyloglucan endotransglucosylase/hydrolase 26

2.Location

Scaffold: PH01000566
Strand: +

RegionStartEnd
gene206483210150
mRNA206483210150
exon206483206778
exon207241207421
exon207534207906
exon209023209280
exon209402209461
exon209574209765
exon209887209946
exon210029210150
CDS206610206778
CDS207241207421
CDS207534207906
CDS209023209280
CDS209402209461
CDS209574209765
CDS209887209946
CDS210029210139

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH16

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00722.20Glyco_hydro_1642170
PF06955.11XET_C210240

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005618cell wall
GO:0005975carbohydrate metabolic process
GO:0006073cellular glucan metabolic process
GO:0016762xyloglucan:xyloglucosyl transferase activity
GO:0048046apoplast

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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