PH01000566G0340's details annotation
1.Annotation
ICBR annotation: CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed
Blast result AT4G28880 : 2.00E-110
Blast annotation: casein kinase I-like 3
2.Location
Scaffold: PH01000566
Strand: +
| Region | Start | End |
| gene | 246943 | 253277 |
| mRNA | 246943 | 253277 |
| exon | 246943 | 247242 |
| exon | 247331 | 247371 |
| exon | 248897 | 248966 |
| exon | 249065 | 249213 |
| exon | 249269 | 249367 |
| exon | 249700 | 249795 |
| exon | 249872 | 249942 |
| exon | 250678 | 250762 |
| exon | 250854 | 250980 |
| exon | 251070 | 251143 |
| exon | 251491 | 251545 |
| exon | 251789 | 251913 |
| exon | 252143 | 253277 |
| CDS | 247167 | 247242 |
| CDS | 247331 | 247371 |
| CDS | 248897 | 248966 |
| CDS | 249065 | 249213 |
| CDS | 249269 | 249367 |
| CDS | 249700 | 249795 |
| CDS | 249872 | 249942 |
| CDS | 250678 | 250762 |
| CDS | 250854 | 250980 |
| CDS | 251070 | 251143 |
| CDS | 251491 | 251545 |
| CDS | 251789 | 251913 |
| CDS | 252143 | 252298 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 9 | 198 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.