PH01000567G0650's details annotation
1.Annotation
ICBR annotation: ribonucleases P/MRP protein subunit POP1 containing protein, expressed
Blast result AT2G47300 : 4.50E-20
Blast annotation: ribonuclease Ps
2.Location
Scaffold: PH01000567
Strand: +
| Region | Start | End |
| gene | 466562 | 469971 |
| mRNA | 466562 | 469971 |
| exon | 466562 | 467526 |
| exon | 467979 | 468087 |
| exon | 468371 | 468817 |
| exon | 469200 | 469202 |
| exon | 469232 | 469446 |
| exon | 469533 | 469971 |
| CDS | 467276 | 467526 |
| CDS | 467979 | 468087 |
| CDS | 468371 | 468817 |
| CDS | 469200 | 469202 |
| CDS | 469232 | 469446 |
| CDS | 469533 | 469737 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08170.11 | POPLD | 84 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004526 | ribonuclease P activity |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.