PH01000570G0110's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G17300 : 2.10E-28
Blast annotation: -
2.Location
Scaffold: PH01000570
Strand: -
| Region | Start | End |
| gene | 60893 | 65798 |
| mRNA | 60893 | 65798 |
| exon | 60893 | 61264 |
| exon | 61466 | 61488 |
| exon | 62555 | 62622 |
| exon | 62733 | 62830 |
| exon | 63278 | 63322 |
| exon | 63881 | 63918 |
| exon | 64869 | 65026 |
| exon | 65566 | 65798 |
| CDS | 61079 | 61264 |
| CDS | 61466 | 61488 |
| CDS | 62555 | 62622 |
| CDS | 62733 | 62830 |
| CDS | 63278 | 63322 |
| CDS | 63881 | 63918 |
| CDS | 64869 | 65026 |
| CDS | 65566 | 65738 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000237 | solute:hydrogen antiporter activity, |
| coexpression network | CFinderM001395 | bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05347.14 | Complex1_LYR | 123 | 174 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.