PH01000570G0350's details annotation
1.Annotation
ICBR annotation: unc-93 homolog A, putative, expressed
Blast result AT3G09470 : 4.00E-50
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000570
Strand: -
| Region | Start | End |
| gene | 208790 | 213065 |
| mRNA | 208790 | 213065 |
| exon | 208790 | 209687 |
| exon | 209863 | 209986 |
| exon | 210083 | 210195 |
| exon | 210476 | 210611 |
| exon | 210653 | 210946 |
| exon | 211842 | 211988 |
| exon | 212322 | 213065 |
| CDS | 209598 | 209687 |
| CDS | 209863 | 209986 |
| CDS | 210083 | 210195 |
| CDS | 210476 | 210611 |
| CDS | 210653 | 210946 |
| CDS | 211842 | 211988 |
| CDS | 212322 | 212401 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000603 | Spliceosome |
| coexpression network | CFinderM001089 | clathrin_coat_assembly clathrin_coat clathrin_binding 1-phosphatidylinositol_binding phospholipid binding, |
| coexpression network | CFinderM001098 | intracellular, Spliceosome |
| coexpression network | CFinderM001852 | calcium-dependent phospholipid binding, single-stranded DNA binding, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.