Annotation of co-expression genes

PH01000572G0680's details annotation

1.Annotation

ICBR annotation: ATPAP18/PAP18, putative, expressed

Blast result AT3G20500 : 0.00E+00
Blast annotation: purple acid phosphatase 18

2.Location

Scaffold: PH01000572
Strand: +

RegionStartEnd
gene455252459257
mRNA455252459257
exon455252455657
exon456958457626
exon457979458167
exon458277458365
exon458451459257
CDS455445455657
CDS456958457626
CDS457979458167
CDS458277458365
CDS458451458670

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000215galactose metabolic process,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
coexpression networkCFinderM000381intracellular protein transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16656.4Pur_ac_phosph_N69149
PF00149.27Metallophos164354
PF14008.5Metallophos_C370426

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003993acid phosphatase activity
GO:0016787hydrolase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.