PH01000572G0720's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G50740 : 4.20E-19
Blast annotation: Transmembrane proteins 14C
2.Location
Scaffold: PH01000572
Strand: +
| Region | Start | End |
| gene | 470375 | 472725 |
| mRNA | 470375 | 472725 |
| exon | 470375 | 471042 |
| exon | 471732 | 471878 |
| exon | 472247 | 472334 |
| exon | 472492 | 472725 |
| CDS | 470739 | 471042 |
| CDS | 471732 | 471878 |
| CDS | 472247 | 472334 |
| CDS | 472492 | 472564 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000707 | CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM001293 | CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03647.12 | Tmemb_14 | 136 | 187 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.