Annotation of co-expression genes

PH01000577G0140's details annotation

1.Annotation

ICBR annotation: white-brown complex homolog protein 12, putative, expressed

Blast result AT1G51500 : 0.00E+00
Blast annotation: ABC-2 type transporter family protein

2.Location

Scaffold: PH01000577
Strand: -

RegionStartEnd
gene103512113346
mRNA103512113346
exon103512105538
exon106806106871
exon107193107381
exon107472107579
exon107681108238
exon108432108557
exon108653108778
exon109004109468
exon112256112335
exon112609113346
CDS104771105538
CDS106806106871
CDS107193107381
CDS107472107579
CDS107681108238
CDS108432108557
CDS108653108778
CDS109004109468
CDS112256112335
CDS112609112864

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000926strictosidine synthase activity,
ATPase activity,
biosynthetic process,
transcription_corepressor_activity
nucleoside-triphosphatase activity,
peroxisomal membrane,
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
response to hormone stimulus,
nucleotide binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

Created with Highcharts 4.1.6Expression value (FPKM)gene expression profiling among different tissue samplesleaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR1050710510152025303540455055Highcharts.com

7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran63205
PF01061.23ABC2_membrane369578
PF06507.12Auxin_resp842896

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0005524ATP binding
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0009725response to hormone stimulus
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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