PH01000580G0380's details annotation
1.Annotation
ICBR annotation: tetratricopeptide-like helical, putative, expressed
Blast result AT3G29230 : 3.00E-81
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000580
Strand: -
| Region | Start | End |
| gene | 292150 | 294624 |
| mRNA | 292150 | 294624 |
| exon | 292150 | 292942 |
| exon | 292979 | 293292 |
| exon | 293466 | 294624 |
| CDS | 292537 | 292942 |
| CDS | 292979 | 293292 |
| CDS | 293466 | 293840 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 26 | 56 |
| PF01535.19 | PPR | 59 | 86 |
| PF01535.19 | PPR | 88 | 115 |
| PF13041.5 | PPR_2 | 130 | 167 |
| PF01535.19 | PPR | 204 | 229 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.