PH01000581G0490's details annotation
1.Annotation
ICBR annotation: lipid phosphatase protein, putative, expressed
Blast result AT1G15080 : 1.30E-35
Blast annotation: lipid phosphate phosphatase 2
2.Location
Scaffold: PH01000581
Strand: +
| Region | Start | End |
| gene | 323610 | 330756 |
| mRNA | 323610 | 330756 |
| exon | 323610 | 324081 |
| exon | 326229 | 326596 |
| exon | 327392 | 327470 |
| exon | 327568 | 327816 |
| exon | 328246 | 328265 |
| exon | 328420 | 328666 |
| exon | 329122 | 329215 |
| exon | 329384 | 329425 |
| exon | 329501 | 329572 |
| exon | 329673 | 329732 |
| exon | 330496 | 330756 |
| CDS | 324022 | 324081 |
| CDS | 326229 | 326596 |
| CDS | 327392 | 327470 |
| CDS | 327568 | 327816 |
| CDS | 328246 | 328265 |
| CDS | 328420 | 328666 |
| CDS | 329122 | 329215 |
| CDS | 329384 | 329425 |
| CDS | 329501 | 329572 |
| CDS | 329673 | 329732 |
| CDS | 330496 | 330680 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000414 | RLK-Pelle_LRR-II (from iTAK) protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, TTK (from iTAK) ATP binding, aromatic amino acid family metabolic process, RLK-Pelle_Extensin (from iTAK) magnesium_ion_transport protein serine/threonine kinase activity, RLK-Pelle_LRR-III (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001487 | regulation of sequence-specific DNA binding transcription factor activity, aromatic amino acid family metabolic process, RLK-Pelle_LRR-II (from iTAK) Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Basal_transcription_factors Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01569.20 | PAP2 | 336 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.