PH01000582G0630's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G48020 : 8.00E-83
Blast annotation: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
2.Location
Scaffold: PH01000582
Strand: -
| Region | Start | End |
| gene | 396898 | 400396 |
| mRNA | 396898 | 400396 |
| exon | 396898 | 397177 |
| exon | 397404 | 397529 |
| exon | 397830 | 398036 |
| exon | 398299 | 398367 |
| exon | 398689 | 398862 |
| exon | 399278 | 400396 |
| CDS | 397136 | 397177 |
| CDS | 397404 | 397529 |
| CDS | 397830 | 398036 |
| CDS | 398299 | 398367 |
| CDS | 398689 | 398862 |
| CDS | 399278 | 399406 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.