Annotation of co-expression genes

PH01000582G0700's details annotation

1.Annotation

ICBR annotation: NBS-LRR disease resistance protein, putative, expressed

Blast result AT3G59760 : 1.20E-50
Blast annotation: O-acetylserine (thiol) lyase isoform C

2.Location

Scaffold: PH01000582
Strand: +

RegionStartEnd
gene439996448692
mRNA439996448692
exon439996440501
exon440911441046
exon441140441223
exon441849442186
exon442401442763
exon443344443677
exon444155444513
exon444774444903
exon445510445887
exon445919446074
exon447410447673
exon447768448193
exon448534448692
CDS440218440501
CDS440911441046
CDS441140441223
CDS441849442186
CDS442401442763
CDS443344443677
CDS444155444513
CDS444774444903
CDS445510445887
CDS445919446074
CDS447410447673
CDS447768448193
CDS448534448656

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00931.21NB-ARC2114
PF00931.21NB-ARC536634
PF01571.20GCV_T711787
PF00291.24PALP837990

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0004047aminomethyltransferase activity
GO:0005737cytoplasm
GO:0006546glycine catabolic process
GO:0006952defense response
GO:0017111nucleoside-triphosphatase activity
GO:0043531ADP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.