Annotation of co-expression genes

PH01000584G0610's details annotation

1.Annotation

ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Blast result AT5G45780 : 3.00E-180
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01000584
Strand: -

RegionStartEnd
gene446024451119
mRNA446024451119
exon446024446836
exon446922447313
exon447539447874
exon447957447982
exon448439448498
exon448595448666
exon448744448887
exon450294450365
exon450507450639
exon450762451119
CDS446519446836
CDS446922447313
CDS447539447874
CDS447957447982
CDS448439448498
CDS448595448666
CDS448744448887
CDS450294450365
CDS450507450639
CDS450762450879

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23776
PF12799.6LRR_4104144
PF00069.24Pkinase235504

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.