PH01000586G0250's details annotation
1.Annotation
ICBR annotation: methyladenine glycosylase, putative, expressed
Blast result AT5G57970 : 1.40E-93
Blast annotation: DNA glycosylase superfamily protein
2.Location
Scaffold: PH01000586
Strand: -
| Region | Start | End |
| gene | 167794 | 175078 |
| mRNA | 167794 | 175078 |
| exon | 167794 | 168554 |
| exon | 168651 | 168792 |
| exon | 168872 | 168955 |
| exon | 169065 | 169122 |
| exon | 171759 | 175078 |
| CDS | 168159 | 168554 |
| CDS | 168651 | 168792 |
| CDS | 168872 | 168955 |
| CDS | 169065 | 169122 |
| CDS | 171759 | 172326 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03352.12 | Adenine_glyco | 188 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | DNA-3-methyladenine glycosylase I [EC:3.2.2.20] | ko03410 | K01246 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006281 | DNA repair |
| GO:0006284 | base-excision repair |
| GO:0008725 | DNA-3-methyladenine glycosylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.