PH01000589G0690's details annotation
1.Annotation
ICBR annotation: succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed
Blast result AT5G66760 : 0.00E+00
Blast annotation: succinate dehydrogenase 1-1
2.Location
Scaffold: PH01000589
Strand: -
| Region | Start | End |
| gene | 413820 | 420833 |
| mRNA | 413820 | 420833 |
| exon | 413820 | 414000 |
| exon | 414091 | 414128 |
| exon | 414220 | 414340 |
| exon | 414436 | 414505 |
| exon | 414669 | 414839 |
| exon | 415016 | 415100 |
| exon | 415203 | 415390 |
| exon | 415494 | 415637 |
| exon | 415806 | 415869 |
| exon | 415953 | 416045 |
| exon | 416391 | 416476 |
| exon | 417048 | 417188 |
| exon | 417288 | 417434 |
| exon | 417538 | 417635 |
| exon | 418706 | 418767 |
| exon | 418980 | 419132 |
| exon | 419554 | 420833 |
| CDS | 413898 | 414000 |
| CDS | 414091 | 414128 |
| CDS | 414220 | 414340 |
| CDS | 414436 | 414505 |
| CDS | 414669 | 414839 |
| CDS | 415016 | 415100 |
| CDS | 415203 | 415390 |
| CDS | 415494 | 415637 |
| CDS | 415806 | 415869 |
| CDS | 415953 | 416045 |
| CDS | 416391 | 416476 |
| CDS | 417048 | 417188 |
| CDS | 417288 | 417434 |
| CDS | 417538 | 417635 |
| CDS | 418706 | 418767 |
| CDS | 418980 | 419132 |
| CDS | 419554 | 419637 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001054 | seryl-tRNA aminoacylation, electron transport chain, bZIP Transcription_Regulator(from PlantTFDB) serine-tRNA ligase activity, RNA metabolic process, |
| coexpression network | CFinderM001055 | NF-YB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001760 | Citrate_cycle_(TCA_cycle) oxoglutarate dehydrogenase complex, transferase activity, transferring acyl groups, protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, dihydrolipoyllysine-residue succinyltransferase activity, tricarboxylic acid cycle, electron transport chain, cellular protein modification process, Lysine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00890.23 | FAD_binding_2 | 38 | 84 |
| PF00890.23 | FAD_binding_2 | 103 | 450 |
| PF02910.19 | Succ_DH_flav_C | 483 | 615 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] | ko00020 | K00234 |
| Oxidative phosphorylation | succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] | ko00190 | K00234 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0022900 | electron transport chain |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.