PH01000589G0830's details annotation
1.Annotation
ICBR annotation: no apical meristem protein, putative, expressed
Blast result AT2G43000 : 2.50E-60
Blast annotation: NAC domain containing protein 42
2.Location
Scaffold: PH01000589
Strand: +
| Region | Start | End |
| gene | 541281 | 543152 |
| mRNA | 541281 | 543152 |
| exon | 541281 | 541517 |
| exon | 541570 | 541645 |
| exon | 541858 | 542162 |
| exon | 542379 | 543152 |
| CDS | 541359 | 541517 |
| CDS | 541570 | 541645 |
| CDS | 541858 | 542162 |
| CDS | 542379 | 542816 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000965 | YABBY Transcription_Regulator(from PlantTFDB) C2C2-YABBY Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 34 | 165 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.