Annotation of co-expression genes

PH01000592G0750's details annotation

1.Annotation

ICBR annotation: pleiotropic drug resistance protein, putative, expressed

Blast result AT2G26910 : 0
Blast annotation: pleiotropic drug resistance 4

2.Location

Scaffold: PH01000592
Strand: +

RegionStartEnd
gene493841505038
mRNA493841505038
exon493841494298
exon494916495036
exon497039497127
exon497208497292
exon497598497757
exon497831497907
exon497990498043
exon498400498505
exon498632498933
exon499016499297
exon499824500140
exon500235500395
exon500496500599
exon502401502504
exon503241503468
exon503566503737
exon503827504081
exon504634505038
CDS493997494298
CDS494916495036
CDS497039497127
CDS497208497292
CDS497598497757
CDS497831497907
CDS497990498043
CDS498400498505
CDS498632498933
CDS499016499297
CDS499824500140
CDS500235500395
CDS500496500599
CDS502401502504
CDS503241503468
CDS503566503737
CDS503827504081
CDS504634504906

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000808RLK-Pelle_LRR-Xa (from iTAK)
peroxisomal membrane,
membrane,
SBP Transcription_Regulator(from PlantTFDB)
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
ATPase activity,
transcription_corepressor_activity
nucleoside-triphosphatase activity,
coexpression networkCFinderM001394membrane,
RLK-Pelle_LRR-Xa (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
ATPase activity,
nucleoside-triphosphatase activity,
3'-5' exonuclease activity,
nucleobase-containing compound metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14510.5ABC_trans_N86135
PF00005.26ABC_tran160347
PF01061.23ABC2_membrane502713
PF01061.23ABC2_membrane7871000

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.