PH01000594G0730's details annotation
1.Annotation
ICBR annotation: DNA-binding bromodomain-containing protein, putative, expressed
Blast result AT3G57980 : 4.40E-35
Blast annotation: DNA-binding bromodomain-containing protein
2.Location
Scaffold: PH01000594
Strand: -
| Region | Start | End |
| gene | 549916 | 555073 |
| mRNA | 549916 | 555073 |
| exon | 549916 | 551042 |
| exon | 551853 | 552396 |
| exon | 552851 | 555073 |
| CDS | 550110 | 551042 |
| CDS | 551853 | 552396 |
| CDS | 552851 | 553173 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001170 | DBP Transcription_Regulator(from iTAK) cellular protein metabolic process, protein dephosphorylation, Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00439.24 | Bromodomain | 276 | 350 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.