PH01000595G0290's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding domain containing protein, expressed
Blast result AT1G09530 : 1.90E-33
Blast annotation: phytochrome interacting factor 3
2.Location
Scaffold: PH01000595
Strand: +
| Region | Start | End |
| gene | 174775 | 177412 |
| mRNA | 174775 | 177412 |
| exon | 174775 | 175640 |
| exon | 175754 | 175846 |
| exon | 175941 | 176006 |
| exon | 176095 | 176160 |
| exon | 176240 | 176638 |
| exon | 176738 | 177412 |
| CDS | 175239 | 175640 |
| CDS | 175754 | 175846 |
| CDS | 175941 | 176006 |
| CDS | 176095 | 176160 |
| CDS | 176240 | 176638 |
| CDS | 176738 | 176773 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000516 | oligopeptide transport, nitrogen compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00010.25 | HLH | 159 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.