PH01000597G0660's details annotation
1.Annotation
ICBR annotation: zinc-finger protein, putative, expressed
Blast result AT5G20900 : 1.40E-24
Blast annotation: jasmonate-zim-domain protein 12
2.Location
Scaffold: PH01000597
Strand: -
| Region | Start | End |
| gene | 490561 | 496555 |
| mRNA | 490561 | 496555 |
| exon | 490561 | 492224 |
| exon | 492817 | 492874 |
| exon | 492971 | 493193 |
| exon | 493287 | 493389 |
| exon | 496205 | 496555 |
| CDS | 492131 | 492224 |
| CDS | 492817 | 492874 |
| CDS | 492971 | 493193 |
| CDS | 493287 | 493389 |
| CDS | 496205 | 496353 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Tify |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06200.13 | tify | 61 | 93 |
| PF09425.9 | CCT_2 | 161 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | jasmonate ZIM domain-containing protein | ko04075 | K13464 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.