PH01000598G0290's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT2G20190 : 0.00E+00
Blast annotation: CLIP-associated protein
2.Location
Scaffold: PH01000598
Strand: +
| Region | Start | End |
| gene | 155787 | 166460 |
| mRNA | 155787 | 166460 |
| exon | 155787 | 155968 |
| exon | 156635 | 156796 |
| exon | 157365 | 157462 |
| exon | 157622 | 157696 |
| exon | 157770 | 157838 |
| exon | 157926 | 158011 |
| exon | 158083 | 158200 |
| exon | 158875 | 158973 |
| exon | 159077 | 159377 |
| exon | 159594 | 161395 |
| exon | 161512 | 161610 |
| exon | 162288 | 162328 |
| exon | 162475 | 162521 |
| exon | 163025 | 163052 |
| exon | 163105 | 163228 |
| exon | 163317 | 163391 |
| exon | 163470 | 163538 |
| exon | 163639 | 163707 |
| exon | 164381 | 164482 |
| exon | 165708 | 166460 |
| CDS | 155923 | 155968 |
| CDS | 156635 | 156796 |
| CDS | 157365 | 157462 |
| CDS | 157622 | 157696 |
| CDS | 157770 | 157838 |
| CDS | 157926 | 158011 |
| CDS | 158083 | 158200 |
| CDS | 158875 | 158973 |
| CDS | 159077 | 159377 |
| CDS | 159594 | 161395 |
| CDS | 161512 | 161610 |
| CDS | 162288 | 162328 |
| CDS | 162475 | 162521 |
| CDS | 163025 | 163052 |
| CDS | 163105 | 163228 |
| CDS | 163317 | 163391 |
| CDS | 163470 | 163538 |
| CDS | 163639 | 163707 |
| CDS | 164381 | 164482 |
| CDS | 165708 | 165866 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001336 | Golgi-associated vesicle, membrane coat, COPI vesicle coat, Homologous_recombination Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12348.7 | CLASP_N | 38 | 253 |
| PF12348.7 | CLASP_N | 539 | 731 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.