PH01000598G0500's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G33205 : 8.00E-80
Blast annotation: Serinc-domain containing serine and sphingolipid biosynthesis protein
2.Location
Scaffold: PH01000598
Strand: +
| Region | Start | End |
| gene | 295705 | 301795 |
| mRNA | 295705 | 301795 |
| exon | 295705 | 296547 |
| exon | 296673 | 296731 |
| exon | 297224 | 297392 |
| exon | 297823 | 297847 |
| exon | 297975 | 298064 |
| exon | 298180 | 298351 |
| exon | 298398 | 298490 |
| exon | 299727 | 299800 |
| exon | 299958 | 300027 |
| exon | 300793 | 300864 |
| exon | 301112 | 301795 |
| CDS | 296241 | 296547 |
| CDS | 296673 | 296731 |
| CDS | 297224 | 297392 |
| CDS | 297823 | 297847 |
| CDS | 297975 | 298064 |
| CDS | 298180 | 298351 |
| CDS | 298398 | 298490 |
| CDS | 299727 | 299800 |
| CDS | 299958 | 300027 |
| CDS | 300793 | 300864 |
| CDS | 301112 | 301273 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001394 | membrane, RLK-Pelle_LRR-Xa (from iTAK) SBP Transcription_Regulator(from PlantTFDB) ATPase activity, nucleoside-triphosphatase activity, 3'-5' exonuclease activity, nucleobase-containing compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03348.14 | Serinc | 18 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.