PH01000604G0280's details annotation
1.Annotation
ICBR annotation: tetraspanin family protein, putative, expressed
Blast result AT3G12090 : 2.90E-82
Blast annotation: tetraspanin6
2.Location
Scaffold: PH01000604
Strand: -
| Region | Start | End |
| gene | 173387 | 174446 |
| mRNA | 173387 | 174446 |
| exon | 173387 | 173761 |
| exon | 173882 | 174446 |
| CDS | 173438 | 173761 |
| CDS | 173882 | 174388 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000151 | SNF2 Transcription_Regulator(from iTAK) response to oxidative stress, ATP-dependent helicase activity, helicase activity, peroxidase activity, heme binding, oxidation-reduction process, Phenylalanine_metabolism Phenylpropanoid_biosynthesis Methane_metabolism nucleic acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00335.19 | Tetraspannin | 10 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.