PH01000604G0580's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT2G28550 : 5.20E-50
Blast annotation: related to AP2.7
2.Location
Scaffold: PH01000604
Strand: +
| Region | Start | End |
| gene | 327782 | 329888 |
| mRNA | 327782 | 329888 |
| exon | 327782 | 328228 |
| exon | 328344 | 328369 |
| exon | 328544 | 328574 |
| exon | 329030 | 329326 |
| exon | 329449 | 329534 |
| exon | 329696 | 329888 |
| CDS | 327849 | 328228 |
| CDS | 328344 | 328369 |
| CDS | 328544 | 328574 |
| CDS | 329030 | 329326 |
| CDS | 329449 | 329534 |
| CDS | 329696 | 329847 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000250 | proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), AP2 Transcription_Regulator(from PlantTFDB) glycerophospholipid_biosynthetic_process chloride transport, Photosynthesis AP2/ERF-ERF Transcription_Regulator(from iTAK) ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Oxidative_phosphorylation membrane, ion channel activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, kinase activity, hydrogen ion transporting ATP synthase activity, rotational mechanism, voltage-gated chloride channel activity, peptidyl-prolyl cis-trans isomerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-ERF |
| Transcription_Regulator(from PlantTFDB) | AP2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 108 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.