PH01000605G0330's details annotation
1.Annotation
ICBR annotation: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
Blast result AT5G13010 : 4.90E-34
Blast annotation: RNA helicase family protein
2.Location
Scaffold: PH01000605
Strand: -
| Region | Start | End |
| gene | 306302 | 308705 |
| mRNA | 306302 | 308705 |
| exon | 306302 | 306596 |
| exon | 306647 | 306824 |
| exon | 307532 | 307637 |
| exon | 308248 | 308705 |
| CDS | 306589 | 306596 |
| CDS | 306647 | 306824 |
| CDS | 307532 | 307637 |
| CDS | 308248 | 308513 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.